Going to start a new save on a lower difficulty and report back.
I have quite a long list of mods installed but I've never experienced this problem before now. My total wealth isn't even over 10k on my Jedi save, while my main save's wealth is 6 figures and counting. I know lightsabers aren't cheap, but I did start myself out with crappy little basic ones, not even any fancy crystals.
On the same difficulty level as my main save (Rough Cassandra), where I would normally see about 10-20 pirates getting murderized in my killbox, instead I'm having 20-30 pirates overrun my tiny Jedi commune. I'm playing a scenario that starts me with 3 Jedi and 3 Lightsabers from the getgo, a sort of 'New Jedi Temple' thing. With all 3 mods installed, for some reason I get swept by HUGE raids really early.